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UC Davis researchers develop computer model for testing heart-disease drugs

Computer-based simulations solve decades-old mystery of failed anti-arrhythmia therapy

Posted Sept. 28, 2011

(Left to right) Pei-Chi Yang, Colleen Clancy and Mao-Tsuen Jeng © UC Regents
Colleen Clancy and her research team have developed a virtual model for testing arrhythmia medications, providing an important first look at the drugs' effects on the heart. From left to right are Pei-Chi Yang, Clancy and Mao-Tsuen Jeng

UC Davis researchers have developed an accurate computer model to test the effects of medications for arrhythmia, or abnormal heart rhythm, before they are used in patients.

The new tool — described in the Aug. 31 issue of the journal Science Translational Medicine — will help scientists screen anti-arrhythmia medications early in the drug-development pipeline and eventually guide physicians in prescribing those interventions to patients who could benefit the most.

"Drug development for arrhythmia has failed because it is difficult to anticipate how drugs will alter the heart's intricate electrical behavior prior to clinical trials," said Clancy, an associate professor of pharmacology at UC Davis and senior author of the study. "We developed a novel approach to solve this problem — a computational framework for making early predictions about the effects of medications on cardiac rhythms."

Testing the model

In the 1980s, the Cardiac Arrhythmia Suppression Trial (CAST) study came to an abrupt halt when scientists discovered that the arrhythmia medication flecainide, used to treat abnormally fast heart rhythms, more than tripled the risk of sudden cardiac death compared to placebo in patients with irregular heartbeats.

"No one ever knew exactly why this happened, and we used our model to find out," said Clancy. "CAST gave us the clinical starting point for our study."


Copyright 2011 AAAS.


Copyright 2011 AAAS.

To further prove the model's utility, Clancy and her team also used it to test lidocaine, an anti-arrhythmia medication with a strong safety profile and sufficient clinical outcomes data.

In conducting the study, Clancy, a biophysicist who specializes in using high-performance computing to understand diseases arising from abnormal excitability, started with existing models that simulate the behavior of heart cells during both normal heart rhythms and arrhythmia. She then devised mathematical formulas to describe the interactions of flecainide and lidocaine with their specific cellular targets — tiny pores in cell membranes called ion channels that are the foundation for cardiac electrical activity. She and her team used these models in a simulation study to predict the effects of these drugs on cardiac rhythms in a 3-D virtual heart.

Visualizing heartbeat changes

The results can be seen as videos showing that in the setting of extra heartbeats, flecainide causes arrhythmia, the condition it was developed to treat. Arrhythmia was not observed with lidocaine, confirming this drug is a safer alternative.

"An additional benefit of this model is that we could see exactly how flecainide causes arrhythmia," Clancy said.

The test showed that flecainide detaches from ion channels very slowly, causing it to build up in cells. This drug action led to a loss of heartbeats in some portions of the heart but not others — a condition that can set the stage for arrhythmia.

According to the study's lead author, Jonathan D. Moreno, a major benefit of the computer-based drug-testing approach is that it allows researchers to follow many processes simultaneously.

"We can test treatments under a range of conditions, including various heart rates, drug concentrations and arrhythmia triggers," said Moreno, who was a graduate student in Clancy's lab when the study was conducted. "It could even be used to mix and match drugs to create multidrug regimens."

To confirm the results, Clancy and her team treated rabbit hearts with the two drugs and found that the simulation correctly predicted the heart rates and concentrations at which the adverse effects were seen with the computer model.

Streamlined drug testing

The researchers hope their model will provide the foundation for a virtual drug-testing system that could streamline the current approach, which is limited to just a few drugs and biological processes at a time. Clancy also hopes her research will lead to quicker discoveries of new arrhythmia therapeutics.

About About the UC Davis Department of Pharmacology

The UC Davis Department of Pharmacology has a dynamic group of faculty, researchers and students who are conducting investigations that ultimately lead to new drugs and drug targets for human diseases. Key research areas include cardiovascular and neural physiology/pharmacology, the genetic basis of disease, synaptic plasticity and development, autoimmune disorders and infectious diseases. These diverse areas of study are unified by common goals — to understand the biological foundations of disease and to identify novel treatments or cures. For more information, visit www.ucdmc.ucdavis.edu/pharmacology/.

"Millions of people each year are affected by cardiac arrhythmias that don't respond well to medications or that must be controlled with implantable defibrillators that can reduce quality of life," said Clancy. "Our model will hopefully speed the discovery of new options."

In addition to Clancy and Moreno (who is now at Cornell University), study co-authors were Pei-Chi Yang, Mao-Tsuen Jeng, Chaoyi Kang, Lianguo Wang and Crystal Ripplinger of UC Davis; Z. Iris Zhu and David Christini of Cornell University; John Bankston and Robert Kass of Columbia University; and Natalia Trayanova and Jason Bayer of Johns Hopkins University.

The research was supported by grants from the American Heart Association, the Alfred P. Sloan Foundation, the National Institutes of Health (NIH) National Heart, Lung and Blood Institute, the National Science Foundation, and the NIH/National Institute of General Medical Sciences Medical Scientist Training Program.

Journalists can request a copy of the study — "A Computational Model to Predict the Effects of Class I Anti-Arrhythmic Drugs on Ventricular Rhythms" — by contacting the American Association for the Advancement of Science at 1-202-326-6440 or scipak@aaas.org.