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SYNTHESIS- Logo
A publication  of the UC Davis Cancer Center
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  F E A T U R E S
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"" Cancer Awareness 101
  The genome farmer
 
Intro to 'omics
"" Metabolomic fingerprint
"" Rewarding Promise
"" Soy power
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Current Issue: Fall/Winter 2003
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  FEATURES
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INTRO TO 'OMICS

For generations, scientists have worked to understand the cell down to its smallest components. Today researchers in the fields of genomics, proteomics, transcriptomics and metabolomics seek to understand the cell as a whole, in all its complexity.

Elbert Branscomb, associate director of the Biology and Biotechnology Research Program at Lawrence Livermore National Laboratory, likens cells to small cities.

"Think of a cell as the whole city of Chicago, at rush hour, busily making another Chicago," says Branscomb, who is also a member of the UC Davis Integrated Cancer Research Program.

Macro biology

The mind spins at the immensity of the challenge: Each human cell has at its disposal about 30,000 genes, the sum of the human genome. Together these genes are capable of producing, via a manufacturing process known as transcription, perhaps 100,000 different proteins. It's the proteins that carry out the cell's work, or metabolism. How many byproducts of metabolism there are — the metabolites — is unknown; a common estimate is 3,000.

For cancer research, the implications are tremendous. "We are moving towards an understanding of cancer that will enable us to tailor-make the optimal treatment for each person," says Hsing-Jien Kung, deputy director of the UC Davis Cancer Center and director of its basic science program. "This university has made a tremendous, multidisciplinary commitment to this revolution, and we are leading the way into the future."

A dramatic convergence of new developments fueled the 'omics revolution. Foremost was the mapping of the human genome, followed closely by gene-array analysis. This powerful new technology allows scientists to sequence thousands of genes at a time in a matter of days. Once-formidable tasks, like pinpointing the genetic differences between two populations — with and without a certain cancer, for example — today are commonplace.

At the same time, old tools have become super-efficient. Less than a generation ago, mass spectrometry could screen for 20 metabolites in a milliliter of urine or blood. The newest machines can screen for thousands in a sample as small as 1/1,000th of a milliliter.

A new mindset

But Branscomb says the biggest factor driving the 'omics revolution is a new mindset. "The most important lesson we've learned from the genomics revolution is that it is often as easy to measure many things as to measure one thing," he says. "Now that we have the capacity to do mass analysis, we are approaching, systematically, problems that were unthinkable just three to four years ago."

Like using genomics, proteomics, transcriptomics and metabolomics to develop a unique fingerprint for each individual. With this information, scientists look forward to the day they will be able to predict an individual's propensity to develop cancer or a cancer patient's response to a certain therapy. Doing so will make cancer a controllable, if not a preventable, disease.

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  Once-formidable tasks, like pinpointing the genetic differences between two populations, today are commonplace.  
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© 2004 UC Regents. All rights reserved.

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